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Conn, A., Chandrasekhar, A., Rongen, M.V., Leyser, O., Chory, J., Navlakha, S. Network trade-offs and homeostasis in Arabidopsis shoot architectures. (2019) PLOS Computational Biology. 15(9):e1007325. DOI: 10.1371/journal.pcbi.1007325

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Bürger, M., Chory, J. Stressed Out About Hormones: How Plants Orchestrate Immunity. (2019) Cell Host & Microbe. 26(2):163-172. DOI: 10.1016/j.chom.2019.07.006

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Zander, M., Willige, B.C., He, Y., Nguyen, T.A., Langford, A.E., Nehring, R., Howell, E., McGrath, R., Bartlett, A., Castanon, R., Nery, J.R., Chen, H., Zhang, Z., Jupe, F., Stepanova, A., Schmitz, R.J., Lewsey, M., Chory, J., Ecker, J.R. Epigenetic silencing of a multifunctional plant stress regulator. (2019) Elife. 8. DOI: 10.7554/eLife.47835

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Li, B., Sun, L., Huang, J., Göschl, C., Shi, W., Chory, J., Busch, W. GSNOR provides plant tolerance to iron toxicity via preventing iron-dependent nitrosative and oxidative cytotoxicity. (2019) Nature Communications. 10(1):3896. DOI: 10.1038/s41467-019-11892-5

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Procko, C., Morrison, S., Dunar, C., Mills, S., Maldonado, B., Cockrum, C., Peters, N.E., Huang, S.C., Chory, J. Big Data to the Bench: Transcriptome Analysis for Undergraduates. (2019) CBE Life Sciences Education. 18(2):ar19. DOI: 10.1187/cbe.18-08-0161

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Zhao, X., Huang, J., Chory, J. GUN1 interacts with MORF2 to regulate plastid RNA editing during retrograde signaling. (2019) Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1820426116

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Ren, H., Willige, B.C., Jaillais, Y., Geng, S., Park, M.Y., Gray, W.M., Chory, J. BRASSINOSTEROID-SIGNALING KINASE 3, a plasma membrane-associated scaffold protein involved in early brassinosteroid signaling. (2019) PLOS Genetics. 15(1):e1007904. DOI: 10.1371/journal.pgen.1007904

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Bürger, M., Mashiguchi, K., Lee, H.J., Nakano, M., Takemoto, K., Seto, Y., Yamaguchi, S., Chory, J. Structural Basis of Karrikin and Non-natural Strigolactone Perception in Physcomitrella patens. (2019) Cell Reports. 26(4):855-865.e5. DOI: 10.1016/j.celrep.2019.01.003

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Gallego-Bartolomé, J., Liu, W., Kuo, P.H., Feng, S., Ghoshal, B., Gardiner, J., Zhao, J.M., Park, S.Y., Chory, J., Jacobsen, S.E. Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. (2019) Cell. DOI: 10.1016/j.cell.2019.01.029

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Bürger, M., Chory, J. Structural and chemical biology of deacetylases for carbohydrates, proteins, small molecules and histones. (2018) Communications Biology. 1:217. DOI: 10.1038/s42003-018-0214-4

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Calil, I.P., Quadros, I.P.S., Araújo, T.C., Duarte, C.E.M., Gouveia-Mageste, B.C., Silva, J.C.F., Brustolini, O.J.B., Teixeira, R.M., Oliveira, C.N., Milagres, R.W.M.M., Martins, G.S., Chory, J., Reis, P.A.B., Machado, J.P.B., Fontes, E.P.B. A WW domain-containing protein forms immune nuclear bodies against begomoviruses. (2018) Molecular Plant. DOI: 10.1016/j.molp.2018.09.009

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Cagnola, J.I., Cerdan, P.D., Pacin, M., Andrade, A., Rodriguez, M.V., Zurbriggen, M., Legris, M., Buchovsky, S., Carrillo, N., Chory, J., Blazquez, M.A., Alabadi, D., Casal, J.J. Long-day photoperiod enhances jasmonic acid-related plant defense. (2018) Plant Physiology. DOI: 10.1104/pp.18.00443

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Zhao, X., Huang, J., Chory, J. Genome uncoupled 1 mutants are hypersensitive to norflurazon and lincomycin. (2018) Plant Physiology. DOI: 10.1104/pp.18.00772


Willige, B.C., Chory, J., Bürger, M. Next Generation of Plant-Associated Bacterial Genome Data. (2018) Cell Host & Microbe. 24(1):10-11. DOI: 10.1016/j.chom.2018.06.009

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Perrella, G., Davidson, M.L.H., O’Donnell, L., Nastase, A.M., Herzyk, P., Breton, G., Pruneda-Paz, J.L., Kay, S.A., Chory, J., Kaiserli, E. ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in . (2018) Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1718099115

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Liu, W., Duttke, S.H., Hetzel, J., Groth, M., Feng, S., Gallego-Bartolome, J., Zhong, Z., Kuo, H.Y., Wang, Z., Zhai, J., Chory, J., Jacobsen, S.E. RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. (2018) Nature Plants. 4(3):181-188. DOI: 10.1038/s41477-017-0100-y

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Qiu, Y., Pasoreck, E.K., Reddy, A.K., Nagatani, A., Ma, W., Chory, J., Chen, M. Mechanism of early light signaling by the carboxy-terminal output module of Arabidopsis phytochrome B. (2017) Nature Communications. 8(1):1905. DOI: 10.1038/s41467-017-02062-6

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Bürger, M., Willige, B.C., Chory, J. A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors. (2017) Nature Communications. 8(1):2201. DOI: 10.1038/s41467-017-02347-w

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Conn, A., Pedmale, U.V., Chory, J., Navlakha, S. High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles. (2017) Cell Systems. 5(1):53-62.e3. DOI: 10.1016/j.cels.2017.06.017

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Conn, A., Pedmale, U.V., Chory, J., Stevens, C.F., Navlakha, S. A Statistical Description of Plant Shoot Architecture. (2017) Current Biology. 27(14):2078-2088.e3. DOI: 10.1016/j.cub.2017.06.009

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Vermeer, J.E.M., van Wijk, R., Goedhart, J., Geldner, N., Chory, J., Gadella, T.W.J., Munnik, T. In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes. (2017) Plant & Cell Physiology. 58(7):1196-1207. DOI: 10.1093/pcp/pcx012

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Seluzicki, A., Burko, Y., Chory, J. Dancing in the dark: darkness as a signal in plants. (2017) Plant, Cell & Environment. 40(11):2487-2501. DOI: 10.1111/pce.12900

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Hetzel, J., Duttke, S.H., Benner, C., Chory, J. Nascent RNA sequencing reveals distinct features in plant transcription. (2016) Proceedings of the National Academy of Sciences of the United States of America. 113(43):12316-12321. DOI: 10.1073/pnas.1603217113

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de Saint Germain, A., Clavé, G., Badet-Denisot, M.A., Pillot, J.P., Cornu, D., Le Caer, J.P., Burger, M., Pelissier, F., Retailleau, P., Turnbull, C., Bonhomme, S., Chory, J., Rameau, C., Boyer, F.D. An histidine covalent receptor and butenolide complex mediates strigolactone perception. (2016) Nature Chemical Biology. 12(10):787-794. DOI: 10.1038/nchembio.2147

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Bjornson, M., Dandekar, A.M., Chory, J., Dehesh, K. Brassinosteroid’s multi-modular interaction with the general stress network customizes stimulus-specific responses in Arabidopsis. (2016) Plant Science. 250:165-177. DOI: 10.1016/j.plantsci.2016.06.007

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Procko, C., Burko, Y., Jaillais, Y., Ljung, K., Long, J.A., Chory, J. The epidermis coordinates auxin-induced stem growth in response to shade. (2016) Genes & Development. 30(13):1529-41. DOI: 10.1101/gad.283234.116

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Yazaki, J., Galli, M., Kim, A.Y., Nito, K., Aleman, F., Chang, K.N., Carvunis, A.R., Quan, R., Nguyen, H., Song, L., Alvarez, J.M., Huang, S.S., Chen, H., Ramachandran, N., Altmann, S., Gutiérrez, R.A., Hill, D.E., Schroeder, J.I., Chory, J., LaBaer, J., Vidal, M., Braun, P., Ecker, J.R. Mapping transcription factor interactome networks using HaloTag protein arrays. (2016) Proceedings of the National Academy of Sciences of the United States of America. 113(29):E4238-47. DOI: 10.1073/pnas.1603229113

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Zheng, Z., Guo, Y., Novák, O., Chen, W., Ljung, K., Noel, J.P., Chory, J. Local auxin metabolism regulates environment-induced hypocotyl elongation. (2016) Nature Plants. 2:16025. DOI: 10.1038/nplants.2016.25

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Pedmale, U.V., Huang, S.S., Zander, M., Cole, B.J., Hetzel, J., Ljung, K., Reis, P.A., Sridevi, P., Nito, K., Nery, J.R., Ecker, J.R., Chory, J. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. (2016) Cell. 164(1-2):233-45. DOI: 10.1016/j.cell.2015.12.018

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Brustolini, O.J.B., Machado, J.P.B., Condori-Apfata, J.A., Coco, D., Deguchi, M., Loriato, V.A.P., Pereira, W.A., Alfenas-Zerbini, P., Zerbini, F.M., Inoue-Nagata, A.K., Santos, A.A., Chory, J., Silva, F.F., Fontes, E.P.B. Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants. (2015) Plant Biotechnology Journal. 13(9):1300-1311. DOI: 10.1111/pbi.12349

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Kaiserli, E., Páldi, K., O’Donnell, L., Batalov, O., Pedmale, U.V., Nusinow, D.A., Kay, S.A., Chory, J. Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci. (2015) Developmental Cell. 35(3):311-21. DOI: 10.1016/j.devcel.2015.10.008

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Willige, B.C., Chory, J. A current perspective on the role of AGCVIII kinases in PIN-mediated apical hook development. (2015) Frontiers in Plant Science. 6:767. DOI: 10.3389/fpls.2015.00767

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Woodson, J.D., Joens, M.S., Sinson, A.B., Gilkerson, J., Salomé, P.A., Weigel, D., Fitzpatrick, J.A., Chory, J. Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts. (2015) Science. 350(6259):450-4. DOI: 10.1126/science.aac7444

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Yu, J., Qiu, H., Liu, X., Wang, M., Gao, Y., Chory, J., Tao, Y. Characterization of tub4(P287L) , a β-tubulin mutant, revealed new aspects of microtubule regulation in shade. (2015) Journal of Integrative Plant Biology. 57(9):757-69. DOI: 10.1111/jipb.12363

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Wudick, M.M., Li, X., Valentini, V., Geldner, N., Chory, J., Lin, J., Maurel, C., Luu, D.T. Subcellular Redistribution of Root Aquaporins Induced by Hydrogen Peroxide. (2015) Molecular Plant. 8(7):1103-14. DOI: 10.1016/j.molp.2015.02.017

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Zorzatto, C., Machado, J.P., Lopes, K.V., Nascimento, K.J., Pereira, W.A., Brustolini, O.J., Reis, P.A., Calil, I.P., Deguchi, M., Sachetto-Martins, G., Gouveia, B.C., Loriato, V.A., Silva, M.A., Silva, F.F., Santos, A.A., Chory, J., Fontes, E.P. NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. (2015) Nature. 520(7549):679-82. DOI: 10.1038/nature14171

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Martins, S., Dohmann, E.M., Cayrel, A., Johnson, A., Fischer, W., Pojer, F., Satiat-Jeunemaître, B., Jaillais, Y., Chory, J., Geldner, N., Vert, G. Internalization and vacuolar targeting of the brassinosteroid hormone receptor BRI1 are regulated by ubiquitination. (2015) Nature Communications. 6:6151. DOI: 10.1038/ncomms7151

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Belkhadir, Y., Yang, L., Hetzel, J., Dangl, J.L., Chory, J. The growth-defense pivot: crisis management in plants mediated by LRR-RK surface receptors. (2014) Trends in Biochemical Sciences. 39(10):447-56. DOI: 10.1016/j.tibs.2014.06.006

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Li, L., Zhang, Q., Pedmale, U.V., Nito, K., Fu, W., Lin, L., Hazen, S.P., Chory, J. PIL1 participates in a negative feedback loop that regulates its own gene expression in response to shade. (2014) Molecular Plant. 7(10):1582-5. DOI: 10.1093/mp/ssu068


Chory, J. Interview with Joanne Chory. (2014) Trends in Biochemical Sciences. 39(10):435-6. DOI: 10.1016/j.tibs.2014.08.002


Krzymuski, M., Cerdán, P.D., Zhu, L., Vinh, A., Chory, J., Huq, E., Casal, J.J. Phytochrome A antagonizes PHYTOCHROME INTERACTING FACTOR 1 to prevent over-activation of photomorphogenesis. (2014) Molecular Plant. 7(9):1415-28. DOI: 10.1093/mp/ssu078

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Procko, C., Crenshaw, C.M., Ljung, K., Noel, J.P., Chory, J. Cotyledon-Generated Auxin Is Required for Shade-Induced Hypocotyl Growth in Brassica rapa. (2014) Plant Physiology. 165(3):1285-1301. DOI: 10.1104/pp.114.241844

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Zheng, Z., Germain, A.d.e. .S., Chory, J. Unfolding the mysteries of strigolactone signaling. (2014) Molecular Plant. 7(6):934-6. DOI: 10.1093/mp/ssu021


Zhong, X., Du, J., Hale, C.J., Gallego-Bartolome, J., Feng, S., Vashisht, A.A., Chory, J., Wohlschlegel, J.A., Patel, D.J., Jacobsen, S.E. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. (2014) Cell. 157(5):1050-60. DOI: 10.1016/j.cell.2014.03.056

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Fitz Gerald, J.N., Carlson, A.L., Smith, E., Maloof, J.N., Weigel, D., Chory, J., Borevitz, J.O., Swanson, R.J. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. (2014) Plant Physiology. 165(1):175-85. DOI: 10.1104/pp.113.233213

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Simon, M.L., Platre, M.P., Assil, S., van Wijk, R., Chen, W.Y., Chory, J., Dreux, M., Munnik, T., Jaillais, Y. A multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis. (2014) Plant Journal. 77(2):322-37. DOI: 10.1111/tpj.12358

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Jung, H.S., Crisp, P.A., Estavillo, G.M., Cole, B., Hong, F., Mockler, T.C., Pogson, B.J., Chory, J. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(35):14474-9. DOI: 10.1073/pnas.1311632110

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Nito, K., Wong, C.C., Yates, J.R., Chory, J. Tyrosine phosphorylation regulates the activity of phytochrome photoreceptors. (2013) Cell Reports. 3(6):1970-9. DOI: 10.1016/j.celrep.2013.05.006

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Guo, Y., Zheng, Z., La Clair, J.J., Chory, J., Noel, J.P. Smoke-derived karrikin perception by the α/β-hydrolase KAI2 from Arabidopsis. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(20):8284-9. DOI: 10.1073/pnas.1306265110

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Zhong, S.H., Liu, J.Z., Jin, H., Lin, L., Li, Q., Chen, Y., Yuan, Y.X., Wang, Z.Y., Huang, H., Qi, Y.J., Chen, X.Y., Vaucheret, H., Chory, J., Li, J., He, Z.H. Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(22):9171-6. DOI: 10.1073/pnas.1219655110

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Zheng, Z., Guo, Y., Novák, O., Dai, X., Zhao, Y., Ljung, K., Noel, J.P., Chory, J. Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1. (2013) Nature Chemical Biology. 9(4):244-6. DOI: 10.1038/nchembio.1178

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Shani, E., Weinstain, R., Zhang, Y., Castillejo, C., Kaiserli, E., Chory, J., Tsien, R.Y., Estelle, M. Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(12):4834-9. DOI: 10.1073/pnas.1300436110

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Woodson, J.D., Perez-Ruiz, J.M., Schmitz, R.J., Ecker, J.R., Chory, J. Sigma factor-mediated plastid retrograde signals control nuclear gene expression. (2013) Plant Journal. 73(1):1-13. DOI: 10.1111/tpj.12011

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Iñigo, S., Giraldez, A.N., Chory, J., Cerdán, P.D. Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription. (2012) Plant Physiology. 160(3):1662-73. DOI: 10.1104/pp.112.205500

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Woodson, J.D., Chory, J. Organelle signaling: how stressed chloroplasts communicate with the nucleus. (2012) Current Biology. 22(17):R690-2. DOI: 10.1016/j.cub.2012.07.028

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Gilkerson, J., Perez-Ruiz, J.M., Chory, J., Callis, J. The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana. (2012) BMC Plant Biology. 12:102. DOI: 10.1186/1471-2229-12-102

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Lu, Y.J., Schornack, S., Spallek, T., Geldner, N., Chory, J., Schellmann, S., Schumacher, K., Kamoun, S., Robatzek, S. Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking. (2012) Cellular Microbiology. 14(5):682-97. DOI: 10.1111/j.1462-5822.2012.01751.x

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Li, L., Ljung, K., Breton, G., Schmitz, R.J., Pruneda-Paz, J., Cowing-Zitron, C., Cole, B.J., Ivans, L.J., Pedmale, U.V., Jung, H.S., Ecker, J.R., Kay, S.A., Chory, J. Linking photoreceptor excitation to changes in plant architecture. (2012) Genes & Development. 26(8):785-90. DOI: 10.1101/gad.187849.112

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Cole, B.J., Chory, J. Image-based analysis of light-grown seedling hypocotyls in Arabidopsis. (2012) Methods in Molecular Biology. 918:1-7. DOI: 10.1007/978-1-61779-995-2_1

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Belkhadir, Y., Jaillais, Y., Epple, P., Balsemão-Pires, E., Dangl, J.L., Chory, J. Brassinosteroids modulate the efficiency of plant immune responses to microbe-associated molecular patterns. (2012) Proceedings of the National Academy of Sciences of the United States of America. 109(1):297-302. DOI: 10.1073/pnas.1112840108

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Cuyvers, S., Dornez, E., Abou Hachem, M., Svensson, B., Hothorn, M., Chory, J., Delcour, J.A., Courtin, C.M. Isothermal titration calorimetry and surface plasmon resonance allow quantifying substrate binding to different binding sites of Bacillus subtilis xylanase. (2012) Analytical Biochemistry. 420(1):90-2. DOI: 10.1016/j.ab.2011.09.005

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Vert, G., Chory, J. Crosstalk in cellular signaling: background noise or the real thing? (2011) Developmental Cell. 21(6):985-91. DOI: 10.1016/j.devcel.2011.11.006

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Won, C., Shen, X., Mashiguchi, K., Zheng, Z., Dai, X., Cheng, Y., Kasahara, H., Kamiya, Y., Chory, J., Zhao, Y. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(45):18518-23. DOI: 10.1073/pnas.1108436108

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Chen, M., Chory, J. Phytochrome signaling mechanisms and the control of plant development. (2011) Trends in Cell Biology. 21(11):664-71. DOI: 10.1016/j.tcb.2011.07.002

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Hothorn, M., Dabi, T., Chory, J. Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4. (2011) Nature Chemical Biology. 7(11):766-8. DOI: 10.1038/nchembio.667

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Keller, M.M., Jaillais, Y., Pedmale, U.V., Moreno, J.E., Chory, J., Ballaré, C.L. Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades. (2011) Plant Journal. 67(2):195-207. DOI: 10.1111/j.1365-313X.2011.04598.x

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Hothorn, M., Belkhadir, Y., Dreux, M., Dabi, T., Noel, J.P., Wilson, I.A., Chory, J. Structural basis of steroid hormone perception by the receptor kinase BRI1. (2011) Nature. 474(7352):467-71. DOI: 10.1038/nature10153

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Filichkin, S.A., Breton, G., Priest, H.D., Dharmawardhana, P., Jaiswal, P., Fox, S.E., Michael, T.P., Chory, J., Kay, S.A., Mockler, T.C. Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. (2011) PLOS One. 6(6):e16907. DOI: 10.1371/journal.pone.0016907

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Balsemão-Pires, E., Jaillais, Y., Olson, B.J., Andrade, L.R., Umen, J.G., Chory, J., Sachetto-Martins, G. The Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism. (2011) BMC Plant Biology. 11:108. DOI: 10.1186/1471-2229-11-108

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Woodson, J.D., Perez-Ruiz, J.M., Chory, J. Heme synthesis by plastid ferrochelatase I regulates nuclear gene expression in plants. (2011) Current Biology. 21(10):897-903. DOI: 10.1016/j.cub.2011.04.004

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Wu, G., Wang, X., Li, X., Kamiya, Y., Otegui, M.S., Chory, J. Methylation of a phosphatase specifies dephosphorylation and degradation of activated brassinosteroid receptors. (2011) Science Signaling. 4(172):ra29. DOI: 10.1126/scisignal.2001258

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Jaillais, Y., Belkhadir, Y., Balsemão-Pires, E., Dangl, J.L., Chory, J. Extracellular leucine-rich repeats as a platform for receptor/coreceptor complex formation. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(20):8503-7. DOI: 10.1073/pnas.1103556108

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Cole, B., Kay, S.A., Chory, J. Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis. (2011) Plant Journal. 65(6):991-1000. DOI: 10.1111/j.1365-313X.2010.04476.x

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Hacham, Y., Holland, N., Butterfield, C., Ubeda-Tomas, S., Bennett, M.J., Chory, J., Savaldi-Goldstein, S. Brassinosteroid perception in the epidermis controls root meristem size. (2011) Development. 138(5):839-48. DOI: 10.1242/dev.061804

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Skylar, A., Sung, F., Hong, F., Chory, J., Wu, X. Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2. (2011) Developmental Biology. 351(1):82-9. DOI: 10.1016/j.ydbio.2010.12.019

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Jaillais, Y., Hothorn, M., Belkhadir, Y., Dabi, T., Nimchuk, Z.L., Meyerowitz, E.M., Chory, J. Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor. (2011) Genes & Development. 25(3):232-7. DOI: 10.1101/gad.2001911

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Chen, M., Galvão, R.M., Li, M., Burger, B., Bugea, J., Bolado, J., Chory, J. Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. (2010) Cell. 141(7):1230-40. DOI: 10.1016/j.cell.2010.05.007

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Jaillais, Y., Chory, J. Unraveling the paradoxes of plant hormone signaling integration. (2010) Nature Structural & Molecular Biology. 17(6):642-5. DOI: 10.1038/nsmb0610-642

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Isono, E., Katsiarimpa, A., Müller, I.K., Anzenberger, F., Stierhof, Y.D., Geldner, N., Chory, J., Schwechheimer, C. The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. (2010) Plant Cell. 22(6):1826-37. DOI: 10.1105/tpc.110.075952

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Todesco, M., Balasubramanian, S., Hu, T.T., Traw, M.B., Horton, M., Epple, P., Kuhns, C., Sureshkumar, S., Schwartz, C., Lanz, C., Laitinen, R.A., Huang, Y., Chory, J., Lipka, V., Borevitz, J.O., Dangl, J.L., Bergelson, J., Nordborg, M., Weigel, D. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. (2010) Nature. 465(7298):632-6. DOI: 10.1038/nature09083

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Atwell, S., Huang, Y.S., Vilhjálmsson, B.J., Willems, G., Horton, M., Li, Y., Meng, D., Platt, A., Tarone, A.M., Hu, T.T., Jiang, R., Muliyati, N.W., Zhang, X., Amer, M.A., Baxter, I., Brachi, B., Chory, J., Dean, C., Debieu, M., de Meaux, J., Ecker, J.R., Faure, N., Kniskern, J.M., Jones, J.D., Michael, T., Nemri, A., Roux, F., Salt, D.E., Tang, C., Todesco, M., Traw, M.B., Weigel, D., Marjoram, P., Borevitz, J.O., Bergelson, J., Nordborg, M. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. (2010) Nature. 465(7298):627-31. DOI: 10.1038/nature08800

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Chory, J. Light signal transduction: an infinite spectrum of possibilities. (2010) Plant Journal. 61(6):982-91. DOI: 10.1111/j.1365-313X.2009.04105.x

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Jung, H.S., Chory, J. Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway? (2010) Plant Physiology. 152(2):453-9. DOI: 10.1104/pp.109.149070


Skylar, A., Hong, F., Chory, J., Weigel, D., Wu, X. STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings. (2010) Development. 137(4):541-9. DOI: 10.1242/dev.041426

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Nishimura, N., Sarkeshik, A., Nito, K., Park, S.Y., Wang, A., Carvalho, P.C., Lee, S., Caddell, D.F., Cutler, S.R., Chory, J., Yates, J.R., Schroeder, J.I. PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis. (2010) Plant Journal. 61(2):290-9. DOI: 10.1111/j.1365-313X.2009.04054.x

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Ausin, I., Mockler, T.C., Chory, J., Jacobsen, S.E. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. (2009) Nature Structural & Molecular Biology. 16(12):1325-7. DOI: 10.1038/nsmb.1690

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Schwartz, C., Balasubramanian, S., Warthmann, N., Michael, T.P., Lempe, J., Sureshkumar, S., Kobayashi, Y., Maloof, J.N., Borevitz, J.O., Chory, J., Weigel, D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. (2009) Genetics. 183(2):723-32, 1SI-7SI. DOI: 10.1534/genetics.109.104984

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Pinheiro, H., Samalova, M., Geldner, N., Chory, J., Martinez, A., Moore, I. Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway. (2009) Journal of Cell Science. 122(Pt 20):3749-58. DOI: 10.1242/jcs.050625

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Vert, G., Chory, J. A toggle switch in plant nitrate uptake. (2009) Cell. 138(6):1064-6. DOI: 10.1016/j.cell.2009.09.005

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Adhikari, N.D., Orler, R., Chory, J., Froehlich, J.E., Larkin, R.M. Porphyrins promote the association of GENOMES UNCOUPLED 4 and a Mg-chelatase subunit with chloroplast membranes. (2009) Journal of Biological Chemistry. 284(37):24783-96. DOI: 10.1074/jbc.M109.025205

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Ibañes, M., Fàbregas, N., Chory, J., Caño-Delgado, A.I. Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles. (2009) Proceedings of the National Academy of Sciences of the United States of America. 106(32):13630-5. DOI: 10.1073/pnas.0906416106

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Geldner, N., Dénervaud-Tendon, V., Hyman, D.L., Mayer, U., Stierhof, Y.D., Chory, J. Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. (2009) Plant Journal. 59(1):169-78. DOI: 10.1111/j.1365-313X.2009.03851.x

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Sellaro, R., Hoecker, U., Yanovsky, M., Chory, J., Casal, J.J. Synergism of red and blue light in the control of Arabidopsis gene expression and development. (2009) Current Biology. 19(14):1216-20. DOI: 10.1016/j.cub.2009.05.062

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De Rybel, B., Audenaert, D., Vert, G., Rozhon, W., Mayerhofer, J., Peelman, F., Coutuer, S., Denayer, T., Jansen, L., Nguyen, L., Vanhoutte, I., Beemster, G.T., Vleminckx, K., Jonak, C., Chory, J., Inzé, D., Russinova, E., Beeckman, T. Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling. (2009) Chemistry & Biology. 16(6):594-604. DOI: 10.1016/j.chembiol.2009.04.008

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Liljegren, S.J., Leslie, M.E., Darnielle, L., Lewis, M.W., Taylor, S.M., Luo, R., Geldner, N., Chory, J., Randazzo, P.A., Yanofsky, M.F., Ecker, J.R. Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. (2009) Development. 136(11):1909-18. DOI: 10.1242/dev.033605

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Pan, Y., Michael, T.P., Hudson, M.E., Kay, S.A., Chory, J., Schuler, M.A. Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. (2009) Plant Physiology. 150(2):858-78. DOI: 10.1104/pp.108.130757

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Li, L., Yu, X., Thompson, A., Guo, M., Yoshida, S., Asami, T., Chory, J., Yin, Y. Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. (2009) Plant Journal. 58(2):275-86. DOI: 10.1111/j.1365-313X.2008.03778.x

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Moreno, J.E., Tao, Y., Chory, J., Ballaré, C.L. Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity. (2009) Proceedings of the National Academy of Sciences of the United States of America. 106(12):4935-40. DOI: 10.1073/pnas.0900701106

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Balasubramanian, S., Schwartz, C., Singh, A., Warthmann, N., Kim, M.C., Maloof, J.N., Loudet, O., Trainer, G.T., Dabi, T., Borevitz, J.O., Chory, J., Weigel, D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. (2009) PLOS One. 4(2):e4318. DOI: 10.1371/journal.pone.0004318

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Dhonukshe, P., Tanaka, H., Goh, T., Ebine, K., Mähönen, A.P., Prasad, K., Blilou, I., Geldner, N., Xu, J., Uemura, T., Chory, J., Ueda, T., Nakano, A., Scheres, B., Friml, J. Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions. (2008) Nature. 456(7224):962-6. DOI: 10.1038/nature07409

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Loudet, O., Michael, T.P., Burger, B.T., Le Metté, C., Mockler, T.C., Weigel, D., Chory, J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(44):17193-8. DOI: 10.1073/pnas.0807264105

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Savaldi-Goldstein, S., Baiga, T.J., Pojer, F., Dabi, T., Butterfield, C., Parry, G., Santner, A., Dharmasiri, N., Tao, Y., Estelle, M., Noel, J.P., Chory, J. New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(39):15190-5. DOI: 10.1073/pnas.0806324105

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Michael, T.P., Breton, G., Hazen, S.P., Priest, H., Mockler, T.C., Kay, S.A., Chory, J. A morning-specific phytohormone gene expression program underlying rhythmic plant growth. (2008) PLOS Biology. 6(9):e225. DOI: 10.1371/journal.pbio.0060225

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Leung, D.W., Otomo, C., Chory, J., Rosen, M.K. Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(35):12797-802. DOI: 10.1073/pnas.0801232105

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Vert, G., Walcher, C.L., Chory, J., Nemhauser, J.L. Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(28):9829-34. DOI: 10.1073/pnas.0803996105

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Jones, A.M., Chory, J., Dangl, J.L., Estelle, M., Jacobsen, S.E., Meyerowitz, E.M., Nordborg, M., Weigel, D. The impact of Arabidopsis on human health: diversifying our portfolio. (2008) Cell. 133(6):939-43. DOI: 10.1016/j.cell.2008.05.040

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Woodson, J.D., Chory, J. Coordination of gene expression between organellar and nuclear genomes. (2008) Nature Reviews. Genetics. 9(5):383-95. DOI: 10.1038/nrg2348

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Yu, X., Li, L., Li, L., Guo, M., Chory, J., Yin, Y. Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(21):7618-23. DOI: 10.1073/pnas.0802254105

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Tao, Y., Ferrer, J.L., Ljung, K., Pojer, F., Hong, F., Long, J.A., Li, L., Moreno, J.E., Bowman, M.E., Ivans, L.J., Cheng, Y., Lim, J., Zhao, Y., Ballaré, C.L., Sandberg, G., Noel, J.P., Chory, J. Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. (2008) Cell. 133(1):164-76. DOI: 10.1016/j.cell.2008.01.049

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Michael, T.P., Mockler, T.C., Breton, G., McEntee, C., Byer, A., Trout, J.D., Hazen, S.P., Shen, R., Priest, H.D., Sullivan, C.M., Givan, S.A., Yanovsky, M., Hong, F., Kay, S.A., Chory, J. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. (2008) PLOS Genetics. 4(2):e14. DOI: 10.1371/journal.pgen.0040014

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Savaldi-Goldstein, S., Chory, J. Growth coordination and the shoot epidermis. (2008) Current Opinion in Plant Biology. 11(1):42-8. DOI: 10.1016/j.pbi.2007.10.009

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Filiault, D.L., Wessinger, C.A., Dinneny, J.R., Lutes, J., Borevitz, J.O., Weigel, D., Chory, J., Maloof, J.N. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(8):3157-62. DOI: 10.1073/pnas.0712174105

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Panikashvili, D., Savaldi-Goldstein, S., Mandel, T., Yifhar, T., Franke, R.B., Höfer, R., Schreiber, L., Chory, J., Aharoni, A. The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion. (2007) Plant Physiology. 145(4):1345-60. DOI: 10.1104/pp.107.105676

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Breuer, C., Stacey, N.J., West, C.E., Zhao, Y., Chory, J., Tsukaya, H., Azumi, Y., Maxwell, A., Roberts, K., Sugimoto-Shirasu, K. BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis. (2007) Plant Cell. 19(11):3655-68. DOI: 10.1105/tpc.107.054833

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Wu, X., Chory, J., Weigel, D. Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. (2007) Developmental Biology. 309(2):306-16. DOI: 10.1016/j.ydbio.2007.07.019

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Michael, T.P., Park, S., Kim, T.S., Booth, J., Byer, A., Sun, Q., Chory, J., Lee, K. Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. (2007) PLOS One. 2(8):e795. DOI: 10.1371/journal.pone.0000795

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Borevitz, J.O., Hazen, S.P., Michael, T.P., Morris, G.P., Baxter, I.R., Hu, T.T., Chen, H., Werner, J.D., Nordborg, M., Salt, D.E., Kay, S.A., Chory, J., Weigel, D., Jones, J.D., Ecker, J.R. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. (2007) Proceedings of the National Academy of Sciences of the United States of America. 104(29):12057-62. DOI: 10.1073/pnas.0705323104

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Geldner, N., Hyman, D.L., Wang, X., Schumacher, K., Chory, J. Endosomal signaling of plant steroid receptor kinase BRI1. (2007) Genes & Development. 21(13):1598-602. DOI: 10.1101/gad.1561307

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Koussevitzky, S., Nott, A., Mockler, T.C., Hong, F., Sachetto-Martins, G., Surpin, M., Lim, J., Mittler, R., Chory, J. Signals from chloroplasts converge to regulate nuclear gene expression. (2007) Science. 316(5825):715-9. DOI: 10.1126/science. 1140516

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Holton, N., Caño-Delgado, A., Harrison, K., Montoya, T., Chory, J., Bishop, G.J. Tomato BRASSINOSTEROID INSENSITIVE1 is required for systemin-induced root elongation in Solanum pimpinellifolium but is not essential for wound signaling. (2007) Plant Cell. 19(5):1709-17. DOI: 10.1105/tpc.106.047795

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Savaldi-Goldstein, S., Peto, C., Chory, J. The epidermis both drives and restricts plant shoot growth. (2007) Nature. 446(7132):199-202. DOI: 10.1038/nature05618

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Koussevitzky, S., Stanne, T.M., Peto, C.A., Giap, T., Sjögren, L.L., Zhao, Y., Clarke, A.K., Chory, J. An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development. (2007) Plant Molecular Biology. 63(1):85-96. DOI: 10.1007/s11103-006-9074-2

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Belkhadir, Y., Wang, X., Chory, J. Arabidopsis brassinosteroid signaling pathway. (2006) Sci. STKE. 2006(364):cm5. DOI: 10.1126/stke.3642006cm5

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Belkhadir, Y., Wang, X., Chory, J. Brassinosteroid signaling pathway. (2006) Sci. STKE. 2006(364):cm4. DOI: 10.1126/stke.3642006cm4

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Belkhadir, Y., Chory, J. Brassinosteroid signaling: a paradigm for steroid hormone signaling from the cell surface. (2006) Science. 314(5804):1410-1. DOI: 10.1126/science.1134040

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Hong, F., Breitling, R., McEntee, C.W., Wittner, B.S., Nemhauser, J.L., Chory, J. RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. (2006) Bioinformatics. 22(22):2825-7. DOI: 10.1093/bioinformatics/btl476

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Nemhauser, J.L., Hong, F., Chory, J. Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. (2006) Cell. 126(3):467-75. DOI: 10.1016/j.cell.2006.05.050

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Wang, X., Chory, J. Brassinosteroids regulate dissociation of BKI1, a negative regulator of BRI1 signaling, from the plasma membrane. (2006) Science. 313(5790):1118-22. DOI: 10.1126/science.1127593

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Balasubramanian, S., Sureshkumar, S., Agrawal, M., Michael, T.P., Wessinger, C., Maloof, J.N., Clark, R., Warthmann, N., Chory, J., Weigel, D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. (2006) Nature Genetics. 38(6):711-5. DOI: 10.1038/ng1818

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Vert, G., Chory, J. Downstream nuclear events in brassinosteroid signalling. (2006) Nature. 441(7089):96-100. DOI: 10.1038/nature04681

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Nott, A., Jung, H.S., Koussevitzky, S., Chory, J. Plastid-to-nucleus retrograde signaling. (2006) Annual Review of Plant Biology. 57:739-59. DOI: 10.1146/annurev.arplant.57.032905.105310

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Verdecia, M.A., Larkin, R.M., Ferrer, J.L., Riek, R., Chory, J., Noel, J.P. [Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding]. (2005) Medecine Sciences (Paris). 21(11):903-4. DOI: 10.1051/medsci/20052111903


Yin, Y., Chory, J., Baulcombe, D. RNAi in transgenic plants. (2005) Current Protocols in Molecular Biology. Chapter 26:Unit 26.6. DOI: 10.1002/0471142727.mb2606s72

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Fan, J., Quan, S., Orth, T., Awai, C., Chory, J., Hu, J. The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. (2005) Plant Physiology. 139(1):231-9. DOI: 10.1104/pp.105.066811

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Mazzella, M.A., Arana, M.V., Staneloni, R.J., Perelman, S., Rodriguez Batiller, M.J., Muschietti, J., Cerdán, P.D., Chen, K., Sánchez, R.A., Zhu, T., Chory, J., Casal, J.J. Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light. (2005) Plant Cell. 17(9):2507-16. DOI: 10.1105/tpc.105.034322

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Nemhauser, J.L., Chory, J. A new FronTIR in targeted protein degradation and plant development. (2005) Cell. 121(7):970-2. DOI: 10.1016/j.cell.2005.06.020

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Werner, J.D., Borevitz, J.O., Uhlenhaut, N.H., Ecker, J.R., Chory, J., Weigel, D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. (2005) Genetics. 170(3):1197-207. DOI: 10.1534/genetics.104.036533

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Wang, X., Li, X., Meisenhelder, J., Hunter, T., Yoshida, S., Asami, T., Chory, J. Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1. (2005) Developmental Cell. 8(6):855-65. DOI: 10.1016/j.devcel.2005.05.001

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Verdecia, M.A., Larkin, R.M., Ferrer, J.L., Riek, R., Chory, J., Noel, J.P. Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding. (2005) PLOS Biology. 3(5):e151. DOI: 10.1371/journal.pbio.0030151

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Chen, M., Tao, Y., Lim, J., Shaw, A., Chory, J. Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals. (2005) Current Biology. 15(7):637-42. DOI: 10.1016/j.cub.2005.02.028

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Werner, J.D., Borevitz, J.O., Warthmann, N., Trainer, G.T., Ecker, J.R., Chory, J., Weigel, D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. (2005) Proceedings of the National Academy of Sciences of the United States of America. 102(7):2460-5. DOI: 10.1073/pnas.0409474102

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Vert, G., Nemhauser, J.L., Geldner, N., Hong, F., Chory, J. Molecular mechanisms of steroid hormone signaling in plants. (2005) Annual Review of Cell and Developmental Biology. 21:177-201. DOI: 10.1146/annurev.cellbio.21.090704.151241

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Yin, Y., Vafeados, D., Tao, Y., Yoshida, S., Asami, T., Chory, J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. (2005) Cell. 120(2):249-59. DOI: 10.1016/j.cell.2004.11.044

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Kinoshita, T., Caño-Delgado, A., Seto, H., Hiranuma, S., Fujioka, S., Yoshida, S., Chory, J. Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. (2005) Nature. 433(7022):167-71. DOI: 10.1038/nature03227

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Russinova, E., Borst, J.W., Kwaaitaal, M., Caño-Delgado, A., Yin, Y., Chory, J., de Vries, S.C. Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1). (2004) Plant Cell. 16(12):3216-29. DOI: 10.1105/tpc.104.025387

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Caño-Delgado, A., Yin, Y., Yu, C., Vafeados, D., Mora-García, S., Cheng, J.C., Nam, K.H., Li, J., Chory, J. BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis. (2004) Development. 131(21):5341-51. DOI: 10.1242/dev.01403

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Fontes, E.P., Santos, A.A., Luz, D.F., Waclawovsky, A.J., Chory, J. The geminivirus nuclear shuttle protein is a virulence factor that suppresses transmembrane receptor kinase activity. (2004) Genes & Development. 18(20):2545-56. DOI: 10.1101/gad.1245904

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Nemhauser, J.L., Mockler, T.C., Chory, J. Interdependency of brassinosteroid and auxin signaling in Arabidopsis. (2004) PLOS Biology. 2(9):E258. DOI: 10.1371/journal.pbio.0020258

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Mockler, T.C., Yu, X., Shalitin, D., Parikh, D., Michael, T.P., Liou, J., Huang, J., Smith, Z., Alonso, J.M., Ecker, J.R., Chory, J., Lin, C. Regulation of flowering time in Arabidopsis by K homology domain proteins. (2004) Proceedings of the National Academy of Sciences of the United States of America. 101(34):12759-64. DOI: 10.1073/pnas.0404552101

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Wolyn, D.J., Borevitz, J.O., Loudet, O., Schwartz, C., Maloof, J., Ecker, J.R., Berry, C.C., Chory, J. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. (2004) Genetics. 167(2):907-17. DOI: 10.1534/genetics.103.024810

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Borevitz, J.O., Chory, J. Genomics tools for QTL analysis and gene discovery. (2004) Current Opinion in Plant Biology. 7(2):132-6. DOI: 10.1016/j.pbi.2004.01.011

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Mora-García, S., Vert, G., Yin, Y., Caño-Delgado, A., Cheong, H., Chory, J. Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis. (2004) Genes & Development. 18(4):448-60. DOI: 10.1101/gad.1174204

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Chen, M., Chory, J., Fankhauser, C. Light signal transduction in higher plants. (2004) Annual Review of Genetics. 38:87-117. DOI: 10.1146/annurev.genet.38.072902.092259

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Nemhauser, J.L., Chory, J. BRing it on: new insights into the mechanism of brassinosteroid action. (2004) J. Exp. Bot. 55(395):265-70. DOI: 10.1093/jxb/erh024

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Maxwell, B.B., Andersson, C.R., Poole, D.S., Kay, S.A., Chory, J. HY5, Circadian Clock-Associated 1, and a cis-element, DET1 dark response element, mediate DET1 regulation of chlorophyll a/b-binding protein 2 expression. (2003) Plant Physiology. 133(4):1565-77. DOI: 10.1104/pp.103.025114

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Lariguet, P., Boccalandro, H.E., Alonso, J.M., Ecker, J.R., Chory, J., Casal, J.J., Fankhauser, C. A growth regulatory loop that provides homeostasis to phytochrome a signaling. (2003) Plant Cell. 15(12):2966-78. DOI: 10.1105/tpc.014563

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Chen, M., Schwab, R., Chory, J. Characterization of the requirements for localization of phytochrome B to nuclear bodies. (2003) Proceedings of the National Academy of Sciences of the United States of America. 100(24):14493-8. DOI: 10.1073/pnas.1935989100

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Nomura, T., Bishop, G.J., Kaneta, T., Reid, J.B., Chory, J., Yokota, T. The LKA gene is a BRASSINOSTEROID INSENSITIVE 1 homolog of pea. (2003) Plant Journal. 36(3):291-300.

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Zhao, Y., Dai, X., Blackwell, H.E., Schreiber, S.L., Chory, J. SIR1, an upstream component in auxin signaling identified by chemical genetics. (2003) Science. 301(5636):1107-10. DOI: 10.1126/science.1084161

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Cerdán, P.D., Chory, J. Regulation of flowering time by light quality. (2003) Nature. 423(6942):881-5. DOI: 10.1038/nature01636

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Nemhauser, J.L., Maloof, J.N., Chory, J. Building integrated models of plant growth and development. (2003) Plant Physiology. 132(2):436-9. DOI: 10.1104/pp.102.017061


Borevitz, J.O., Liang, D., Plouffe, D., Chang, H.S., Zhu, T., Weigel, D., Berry, C.C., Winzeler, E., Chory, J. Large-scale identification of single-feature polymorphisms in complex genomes. (2003) Genome Research. 13(3):513-23. DOI: 10.1101/gr.541303

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Larkin, R.M., Alonso, J.M., Ecker, J.R., Chory, J. GUN4, a regulator of chlorophyll synthesis and intracellular signaling. (2003) Science. 299(5608):902-6. DOI: 10.1126/science.1079978

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Strand, A., Asami, T., Alonso, J., Ecker, J.R., Chory, J. Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX. (2003) Nature. 421(6918):79-83. DOI: 10.1038/nature01204

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Staiger, D., Allenbach, L., Salathia, N., Fiechter, V., Davis, S.J., Millar, A.J., Chory, J., Fankhauser, C. The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. (2003) Genes & Development. 17(2):256-68. DOI: 10.1101/gad.244103

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Zhao, Y., Hull, A.K., Gupta, N.R., Goss, K.A., Alonso, J., Ecker, J.R., Normanly, J., Chory, J., Celenza, J.L. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. (2002) Genes & Development. 16(23):3100-12. DOI: 10.1101/gad.1035402

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Beachy, R., Bennetzen, J.L., Chassy, B.M., Chrispeels, M., Chory, J., Ecker, J.R., Noel, J.P., Kay, S.A., Dean, C., Lamb, C., Jones, J., Santerre, C.R., Schroeder, J.I., Umen, J., Yanofsky, M., Wessler, S., Zhao, Y., Parrott, W. Divergent perspectives on GM food. (2002) Nature Biotechnology. 20(12):1195-6; author reply 1197. DOI: 10.1038/nbt1202-1195


Thummel, C.S., Chory, J. Steroid signaling in plants and insects–common themes, different pathways. (2002) Genes & Development. 16(24):3113-29. DOI: 10.1101/gad.1042102


Friedrichsen, D.M., Nemhauser, J., Muramitsu, T., Maloof, J.N., Alonso, J., Ecker, J.R., Furuya, M., Chory, J. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. (2002) Genetics. 162(3):1445-56.

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Schroeder, D.F., Gahrtz, M., Maxwell, B.B., Cook, R.K., Kan, J.M., Alonso, J.M., Ecker, J.R., Chory, J. De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis. (2002) Current Biology. 12(17):1462-72.

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Moore, D., Dowhan, D., Chory, J., Ribaudo, R.K. Isolation and purification of large DNA restriction fragments from agarose gels. (2002) Current Protocols in Molecular Biology. Chapter 2:Unit 2.6. DOI: 10.1002/0471142727.mb0206s59

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Nemhauser, J., Chory, J. Photomorphogenesis. (2002) Arabidopsis Book. 1:e0054. DOI: 10.1199/tab.0054


Hu, J., Aguirre, M., Peto, C., Alonso, J., Ecker, J., Chory, J. A role for peroxisomes in photomorphogenesis and development of Arabidopsis. (2002) Science. 297(5580):405-9. DOI: 10.1126/science.1073633

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Yin, Y., Cheong, H., Friedrichsen, D., Zhao, Y., Hu, J., Mora-Garcia, S., Chory, J. A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development. (2002) Proceedings of the National Academy of Sciences of the United States of America. 99(15):10191-6. DOI: 10.1073/pnas.152337599

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Yin, Y., Wu, D., Chory, J. Plant receptor kinases: systemin receptor identified. (2002) Proceedings of the National Academy of Sciences of the United States of America. 99(14):9090-2. DOI: 10.1073/pnas.152330799


Yin, Y., Wang, Z.Y., Mora-Garcia, S., Li, J., Yoshida, S., Asami, T., Chory, J. BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation. (2002) Cell. 109(2):181-91.

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Wang, Z.Y., Nakano, T., Gendron, J., He, J., Chen, M., Vafeados, D., Yang, Y., Fujioka, S., Yoshida, S., Asami, T., Chory, J. Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis. (2002) Developmental Cell. 2(4):505-13.

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Borevitz, J.O., Maloof, J.N., Lutes, J., Dabi, T., Redfern, J.L., Trainer, G.T., Werner, J.D., Asami, T., Berry, C.C., Weigel, D., Chory, J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. (2002) Genetics. 160(2):683-96.

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Nordborg, M., Borevitz, J.O., Bergelson, J., Berry, C.C., Chory, J., Hagenblad, J., Kreitman, M., Maloof, J.N., Noyes, T., Oefner, P.J., Stahl, E.A., Weigel, D. The extent of linkage disequilibrium in Arabidopsis thaliana. (2002) Nature Genetics. 30(2):190-3. DOI: 10.1038/ng813

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Surpin, M., Larkin, R.M., Chory, J. Signal transduction between the chloroplast and the nucleus. (2002) Plant Cell. 14 Suppl:S327-38.


Maloof, J.N., Borevitz, J.O., Dabi, T., Lutes, J., Nehring, R.B., Redfern, J.L., Trainer, G.T., Wilson, J.M., Asami, T., Berry, C.C., Weigel, D., Chory, J. Natural variation in light sensitivity of Arabidopsis. (2001) Nature Genetics. 29(4):441-6. DOI: 10.1038/ng777

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Friedrichsen, D., Chory, J. Steroid signaling in plants: from the cell surface to the nucleus. (2001) BioEssays. 23(11):1028-36. DOI: 10.1002/bies.1148

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Luan, S., Kudla, J., Harter, K., Gruissem, W., Chory, J. Renaming genes and duplication of gene names in the literature. (2001) Plant Cell. 13(11):2391-2.


Zhao, Y., Chory, J. A link between the light and gibberellin signaling cascades. (2001) Developmental Cell. 1(3):315-6.

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Li, J., Nam, K.H., Vafeados, D., Chory, J. BIN2, a new brassinosteroid-insensitive locus in Arabidopsis. (2001) Plant Physiology. 127(1):14-22.

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Gil, P., Dewey, E., Friml, J., Zhao, Y., Snowden, K.C., Putterill, J., Palme, K., Estelle, M., Chory, J. BIG: a calossin-like protein required for polar auxin transport in Arabidopsis. (2001) Genes & Development. 15(15):1985-97. DOI: 10.1101/gad.905201

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Liu, X.L., Covington, M.F., Fankhauser, C., Chory, J., Wagner, D.R. ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. (2001) Plant Cell. 13(6):1293-304.

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Chory, J., Pollard, J.D. Separation of small DNA fragments by conventional gel electrophoresis. (2001) Current Protocols in Molecular Biology. Chapter 2:Unit 2.7. DOI: 10.1002/0471142727.mb0207s47

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Ellington, A., Chory, J. Deprotection of oligonucleotides and purification using denaturing PAGE. (2001) Curr Protoc Immunol. Chapter 10:Unit 10.7. DOI: 10.1002/0471142735.im1007s06

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Moore, D., Chory, J., Ribaudo, R.K. Isolation and purification of large DNA restriction fragments from agarose gels. (2001) Curr Protoc Immunol. Chapter 10:Unit 10.5. DOI: 10.1002/0471142735.im1005s08

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Wang, Z.Y., Seto, H., Fujioka, S., Yoshida, S., Chory, J. BRI1 is a critical component of a plasma-membrane receptor for plant steroids. (2001) Nature. 410(6826):380-3. DOI: 10.1038/35066597

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Mochizuki, N., Brusslan, J.A., Larkin, R., Nagatani, A., Chory, J. Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. (2001) Proceedings of the National Academy of Sciences of the United States of America. 98(4):2053-8. DOI: 10.1073/pnas.98.4.2053

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Zhao, Y., Christensen, S.K., Fankhauser, C., Cashman, J.R., Cohen, J.D., Weigel, D., Chory, J. A role for flavin monooxygenase-like enzymes in auxin biosynthesis. (2001) Science. 291(5502):306-9. DOI: 10.1126/science.291.5502.306

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Chory, J., Wu, D. Weaving the complex web of signal transduction. (2001) Plant Physiology. 125(1):77-80.


Maloof, J.N., Borevitz, J.O., Weigel, D., Chory, J. Natural variation in phytochrome signaling. (2000) Seminars in Cell & Developmental Biology. 11(6):523-30. DOI: 10.1006/scdb.2000.0198

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Spiegelman, J.I., Mindrinos, M.N., Fankhauser, C., Richards, D., Lutes, J., Chory, J., Oefner, P.J. Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography. (2000) Plant Cell. 12(12):2485-2498.

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Vinti, G., Hills, A., Campbell, S., Bowyer, J.R., Mochizuki, N., Chory, J., López-Juez, E. Interactions between hy1 and gun mutants of Arabidopsis, and their implications for plastid/nuclear signalling. (2000) Plant Journal. 24(6):883-94.

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McCarty, D.R., Chory, J. Conservation and innovation in plant signaling pathways. (2000) Cell. 103(2):201-9.


Genick, U.K., Chory, J. Red light sensing in plants. (2000) Current Biology. 10(18):R651-4. DOI: https://doi.org/10.1016/S0960-9822(00)00694-1

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Allen, G.J., Chu, S.P., Schumacher, K., Shimazaki, C.T., Vafeados, D., Kemper, A., Hawke, S.D., Tallman, G., Tsien, R.Y., Harper, J.F., Chory, J., Schroeder, J.I. Alteration of stimulus-specific guard cell calcium oscillations and stomatal closing in Arabidopsis det3 mutant. (2000) Science. 289(5488):2338-42.

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Fankhauser, C., Chory, J. RSF1, an Arabidopsis locus implicated in phytochrome A signaling. (2000) Plant Physiology. 124(1):39-45.

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Friedrichsen, D.M., Joazeiro, C.A., Li, J., Hunter, T., Chory, J. Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase. (2000) Plant Physiology. 123(4):1247-56.

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Jarvis, P., Dörmann, P., Peto, C.A., Lutes, J., Benning, C., Chory, J. Galactolipid deficiency and abnormal chloroplast development in the Arabidopsis MGD synthase 1 mutant. (2000) Proceedings of the National Academy of Sciences of the United States of America. 97(14):8175-9. DOI: 10.1073/pnas.100132197

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He, Z., Wang, Z.Y., Li, J., Zhu, Q., Lamb, C., Ronald, P., Chory, J. Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1. (2000) Science. 288(5475):2360-3.

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Chory, J., Ecker, J.R., Briggs, S., Caboche, M., Coruzzi, G.M., Cook, D., Dangl, J., Grant, S., Guerinot, M.L., Henikoff, S., Martienssen, R., Okada, K., Raikhel, N.V., Somerville, C.R., Weigel, D. National Science Foundation-Sponsored Workshop Report: “The 2010 Project” functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. (2000) Plant Physiology. 123(2):423-6.


Willows, R.D., Mayer, S.M., Foulk, M.S., DeLong, A., Hanson, K., Chory, J., Beale, S.I. Phytobilin biosynthesis: the Synechocystis sp. PCC 6803 heme oxygenase-encoding ho1 gene complements a phytochrome-deficient Arabidopsis thalianna hy1 mutant. (2000) Plant Molecular Biology. 43(1):113-20.

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Weigel, D., Ahn, J.H., Blázquez, M.A., Borevitz, J.O., Christensen, S.K., Fankhauser, C., Ferrándiz, C., Kardailsky, I., Malancharuvil, E.J., Neff, M.M., Nguyen, J.T., Sato, S., Wang, Z.Y., Xia, Y., Dixon, R.A., Harrison, M.J., Lamb, C.J., Yanofsky, M.F., Chory, J. Activation tagging in Arabidopsis. (2000) Plant Physiology. 122(4):1003-13.

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Christensen, S.K., Dagenais, N., Chory, J., Weigel, D. Regulation of auxin response by the protein kinase PINOID. (2000) Cell. 100(4):469-78.

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Schumacher, K., Chory, J. Brassinosteroid signal transduction: still casting the actors. (2000) Current Opinion in Plant Biology. 3(1):79-84.

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Neff, M.M., Fankhauser, C., Chory, J. Light: an indicator of time and place. (2000) Genes & Development. 14(3):257-71.


Schumacher, K., Vafeados, D., McCarthy, M., Sze, H., Wilkins, T., Chory, J. The Arabidopsis det3 mutant reveals a central role for the vacuolar H(+)-ATPase in plant growth and development. (1999) Genes & Development. 13(24):3259-70.

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Neff, M.M., Nguyen, S.M., Malancharuvil, E.J., Fujioka, S., Noguchi, T., Seto, H., Tsubuki, M., Honda, T., Takatsuto, S., Yoshida, S., Chory, J. BAS1: A gene regulating brassinosteroid levels and light responsiveness in Arabidopsis. (1999) Proceedings of the National Academy of Sciences of the United States of America. 96(26):15316-23.

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Kardailsky, I., Shukla, V.K., Ahn, J.H., Dagenais, N., Christensen, S.K., Nguyen, J.T., Chory, J., Harrison, M.J., Weigel, D. Activation tagging of the floral inducer FT. (1999) Science. 286(5446):1962-5.

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Streatfield, S.J., Weber, A., Kinsman, E.A., Häusler, R.E., Li, J., Post-Beittenmiller, D., Kaiser, W.M., Pyke, K.A., Flügge, U.I., Chory, J. The phosphoenolpyruvate/phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-dependent nuclear gene expression. (1999) Plant Cell. 11(9):1609-22.

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Noguchi, T., Fujioka, S., Takatsuto, S., Sakurai, A., Yoshida, S., Li, J., Chory, J. Arabidopsis det2 is defective in the conversion of (24R)-24-methylcholest-4-En-3-one to (24R)-24-methyl-5alpha-cholestan-3-one in brassinosteroid biosynthesis. (1999) Plant Physiology. 120(3):833-40.

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Fankhauser, C., Yeh, K.C., Lagarias, J.C., Zhang, H., Elich, T.D., Chory, J. PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis. (1999) Science. 284(5419):1539-41.

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Fankhauser, C., Chory, J. Light receptor kinases in plants! (1999) Current Biology. 9(4):R123-6.

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López-Juez, E., Jarvis, R.P., Takeuchi, A., Page, A.M., Chory, J. New Arabidopsis cue mutants suggest a close connection between plastid- and phytochrome regulation of nuclear gene expression. (1998) Plant Physiology. 118(3):803-15.

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Jarvis, P., Chen, L.J., Li, H., Peto, C.A., Fankhauser, C., Chory, J. An Arabidopsis mutant defective in the plastid general protein import apparatus. (1998) Science. 282(5386):100-3.

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Neff, M.M., Chory, J. Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development. (1998) Plant Physiology. 118(1):27-35.

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Neff, M.M., Neff, J.D., Chory, J., Pepper, A.E. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. (1998) Plant Journal. 14(3):387-92.

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Reed, J.W., Elumalai, R.P., Chory, J. Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signaling and hypocotyl elongation. (1998) Genetics. 148(3):1295-310.

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Li, J., Chory, J. Preparation of DNA from Arabidopsis. (1998) Methods in Molecular Biology. 82:55-60.


Elich, T.D., Chory, J. Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins. (1997) Plant Cell. 9(12):2271-80. DOI: 10.1105/tpc.9.12.2271

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Hamazato, F., Shinomura, T., Hanzawa, H., Chory, J., Furuya, M. Fluence and wavelength requirements for Arabidopsis CAB gene induction by different phytochromes. (1997) Plant Physiology. 115(4):1533-40.

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Elich, T.D., Chory, J. Phytochrome: if it looks and smells like a histidine kinase, is it a histidine kinase? (1997) Cell. 91(6):713-6.


Fujioka, S., Li, J., Choi, Y.H., Seto, H., Takatsuto, S., Noguchi, T., Watanabe, T., Kuriyama, H., Yokota, T., Chory, J., Sakurai, A. The Arabidopsis deetiolated2 mutant is blocked early in brassinosteroid biosynthesis. (1997) Plant Cell. 9(11):1951-62. DOI: 10.1105/tpc.9.11.1951

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Anderson, S.L., Somers, D.E., Millar, A.J., Hanson, K., Chory, J., Kay, S.A. Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. (1997) Plant Cell. 9(10):1727-43. DOI: 10.1105/tpc.9.10.1727

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Li, J., Chory, J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. (1997) Cell. 90(5):929-38. DOI: https://doi.org/10.1016/S0092-8674(00)80357-8

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Chory, J. Light modulation of vegetative development. (1997) Plant Cell. 9(7):1225-34. DOI: 10.1105/tpc.9.7.1225


Li, J., Biswas, M.G., Chao, A., Russell, D.W., Chory, J. Conservation of function between mammalian and plant steroid 5alpha-reductases. (1997) Proceedings of the National Academy of Sciences of the United States of America. 94(8):3554-9.

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Pepper, A.E., Chory, J. Extragenic suppressors of the Arabidopsis det1 mutant identify elements of flowering-time and light-response regulatory pathways. (1997) Genetics. 145(4):1125-37.

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Mulligan, R.M., Chory, J., Ecker, J.R. Signaling in plants. (1997) Proceedings of the National Academy of Sciences of the United States of America. 94(7):2793-5.

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Surpin, M., Chory, J. The co-ordination of nuclear and organellar genome expression in eukaryotic cells. (1997) Essays Biochem. 32:113-25.

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Fankhauser, C., Chory, J. Light control of plant development. (1997) Annual Review of Cell and Developmental Biology. 13:203-29. DOI: 10.1146/annurev.cellbio.13.1.203

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Fujioka, S., Choi, Y.H., Takatsuto, S., Yokota, T., Li, J., Chory, J., Sakurai, A. Identification of castasterone, 6-deoxocastasterone, typhasterol and 6-deoxotyphasterol from the shoots of Arabidopsis thaliana. (1996) Plant & Cell Physiology. 37(8):1201-3.

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Mochizuki, N., Susek, R., Chory, J. An intracellular signal transduction pathway between the chloroplast and nucleus is involved in de-etiolation. (1996) Plant Physiology. 112(4):1465-9.

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Meehan, L., Harkins, K., Chory, J., Rodermel, S. Lhcb Transcription Is Coordinated with Cell Size and Chlorophyll Accumulation (Studies on Fluorescence-Activated, Cell-Sorter-Purified Single Cells from Wild-Type and immutans Arabidopsis thaliana). (1996) Plant Physiology. 112(3):953-963.

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Chory, J., Chatterjee, M., Cook, R.K., Elich, T., Fankhauser, C., Li, J., Nagpal, P., Neff, M., Pepper, A., Poole, D., Reed, J., Vitart, V. From seed germination to flowering, light controls plant development via the pigment phytochrome. (1996) Proceedings of the National Academy of Sciences of the United States of America. 93(22):12066-71.

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Reed, J.W., Foster, K.R., Morgan, P.W., Chory, J. Phytochrome B affects responsiveness to gibberellins in Arabidopsis. (1996) Plant Physiology. 112(1):337-42.

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Li, J., Nagpal, P., Vitart, V., McMorris, T.C., Chory, J. A role for brassinosteroids in light-dependent development of Arabidopsis. (1996) Science. 272(5260):398-401.

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Chory, J., Cook, R.K., Dixon, R., Elich, T., Li, H.M., Lopez, E., Mochizuki, N., Nagpal, P., Pepper, A., Poole, D. Signal-transduction pathways controlling light-regulated development in Arabidopsis. (1995) Philos. Trans. R. Soc. Lond., B, Biol. Sci. 350(1331):59-65. DOI: 10.1098/rstb.1995.0138

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Li, H., Culligan, K., Dixon, R.A., Chory, J. CUE1: A Mesophyll Cell-Specific Positive Regulator of Light-Controlled Gene Expression in Arabidopsis. (1995) Plant Cell. 7(10):1599-1610. DOI: 10.1105/tpc.7.10.1599

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Millar, A.J., Straume, M., Chory, J., Chua, N.H., Kay, S.A. The regulation of circadian period by phototransduction pathways in Arabidopsis. (1995) Science. 267(5201):1163-6.

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Chory, J., Li, H.M., Mochizuki, N. Molecular methods for isolation of signal transduction pathway mutants. (1995) Methods in Cell Biology. 49:441-54.


Elich, T.D., Chory, J. Initial events in phytochrome signalling: still in the dark. (1994) Plant Molecular Biology. 26(5):1315-27.


Reed, J.W., Chory, J. Mutational analyses of light-controlled seedling development in Arabidopsis. (1994) Seminars in Cell Biology. 5(5):327-34.

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Chory, J. Plant phototransduction. Phytochrome signal transduction. (1994) Current Biology. 4(9):844-6.

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Pepper, A., Delaney, T., Washburn, T., Poole, D., Chory, J. DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein. (1994) Cell. 78(1):109-16.

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Reed, J.W., Nagatani, A., Elich, T.D., Fagan, M., Chory, J. Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development. (1994) Plant Physiology. 104(4):1139-1149.

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Quail, P.H., Briggs, W.R., Chory, J., Hangarter, R.P., Harberd, N.P., Kendrick, R.E., Koornneef, M., Parks, B., Sharrock, R.A., Schafer, E., Thompson, W.F., Whitelam, G.C. Spotlight on Phytochrome Nomenclature. (1994) Plant Cell. 6(4):468-471. DOI: 10.1105/tpc.6.4.468


Chory, J., Reinecke, D., Sim, S., Washburn, T., Brenner, M. A Role for Cytokinins in De-Etiolation in Arabidopsis (det Mutants Have an Altered Response to Cytokinins). (1994) Plant Physiology. 104(2):339-347.

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Li, H.M., Altschmied, L., Chory, J. Arabidopsis mutants define downstream branches in the phototransduction pathway. (1994) Genes & Development. 8(3):339-49.

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Chory, J., Elich, T., Li, H.M., Pepper, A., Poole, D., Reed, J., Susek, R., Vitart, V., Washburn, T., Furuya, M. Genes controlling Arabidopsis photomorphogenesis. (1994) Biochem. Soc. Symp. 60:257-63.


Susek, R.E., Ausubel, F.M., Chory, J. Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. (1993) Cell. 74(5):787-99.

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Li, H.M., Washburn, T., Chory, J. Regulation of gene expression by light. (1993) Current Opinion in Cell Biology. 5(3):455-60.

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Chory, J. Out of darkness: mutants reveal pathways controlling light-regulated development in plants. (1993) Trends in Genetics. 9(5):167-72.

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Nagatani, A., Reed, J.W., Chory, J. Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A. (1993) Plant Physiology. 102(1):269-277.

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Reed, J.W., Nagpal, P., Poole, D.S., Furuya, M., Chory, J. Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. (1993) Plant Cell. 5(2):147-57. DOI: 10.1105/tpc.5.2.147

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Chory, J. Light signals in leaf and chloroplast development: photoreceptors and downstream responses in search of a transduction pathway. (1991) New Biol. 3(6):538-48.

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Chory, J., Nagpal, P., Peto, C.A. Phenotypic and Genetic Analysis of det2, a New Mutant That Affects Light-Regulated Seedling Development in Arabidopsis. (1991) Plant Cell. 3(5):445-459. DOI: 10.1105/tpc.3.5.445

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Chory, J., Aguilar, N., Peto, C.A. The phenotype of Arabidopsis thaliana det1 mutants suggests a role for cytokinins in greening. (1991) Symp. Soc. Exp. Biol. 45:21-9.

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Chory, J., Peto, C.A. Mutations in the DET1 gene affect cell-type-specific expression of light-regulated genes and chloroplast development in Arabidopsis. (1990) Proceedings of the National Academy of Sciences of the United States of America. 87(22):8776-80.

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Ohl, S., Hedrick, S.A., Chory, J., Lamb, C.J. Functional properties of a phenylalanine ammonia-lyase promoter from Arabidopsis. (1990) Plant Cell. 2(9):837-48. DOI: 10.1105/tpc.2.9.837

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Chory, J., Peto, C.A., Ashbaugh, M., Saganich, R., Pratt, L., Ausubel, F. Different Roles for Phytochrome in Etiolated and Green Plants Deduced from Characterization of Arabidopsis thaliana Mutants. (1989) Plant Cell. 1(9):867-880. DOI: 10.1105/tpc.1.9.867

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Chory, J., Peto, C., Feinbaum, R., Pratt, L., Ausubel, F. Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. (1989) Cell. 58(5):991-9.

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Chory, J., Voytas, D.F., Olszewski, N.E., Ausubel, F.M. Gibberellin-Induced Changes in the Populations of Translatable mRNAs and Accumulated Polypeptides in Dwarfs of Maize and Pea. (1987) Plant Physiology. 83(1):15-23.

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Hoger, J.H., Chory, J., Kaplan, S. In vitro biosynthesis and membrane association of photosynthetic reaction center subunits from Rhodopseudomonas sphaeroides. (1986) J. Bacteriol. 165(3):942-50.

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Donohue, T.J., Chory, J., Goldsand, T.E., Lynn, S.P., Kaplan, S. Structure and physical map of Rhodopseudomonas sphaeroides bacteriophage RS1 DNA. (1985) Journal of Virology. 55(1):147-57.

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Chory, J., Muller, E.D., Kaplan, S. DNA-directed in vitro synthesis and assembly of the form II D-ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodopseudomonas sphaeroides. (1985) J. Bacteriol. 161(1):307-13.

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Muller, E.D., Chory, J., Kaplan, S. Cloning and characterization of the gene product of the form II ribulose-1,5-bisphosphate carboxylase gene of Rhodopseudomonas sphaeroides. (1985) J. Bacteriol. 161(1):469-72.

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Chory, J., Donohue, T.J., Varga, A.R., Staehelin, L.A., Kaplan, S. Induction of the photosynthetic membranes of Rhodopseudomonas sphaeroides: biochemical and morphological studies. (1984) J. Bacteriol. 159(2):540-54.

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Chory, J., Kaplan, S. Light-dependent regulation of the synthesis of soluble and intracytoplasmic membrane proteins of Rhodopseudomonas sphaeroides. (1983) J. Bacteriol. 153(1):465-74.

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Chory, J., Kaplan, S. The in vitro transcription-translation of DNA and RNA templates by extracts of Rhodopseudomonas sphaeroides. Optimization and comparison of template specificity with Escherichia coli extracts and in v (1982) Journal of Biological Chemistry. 257(24):15110-21.

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